pertpy icon indicating copy to clipboard operation
pertpy copied to clipboard

Generalize de_res_to_anndata

Open Zethson opened this issue 2 years ago • 0 comments

Description of feature

de_res_to_anndata is not flexible enough:

  • [ ] Check whether it also works with less columns (no gene names, score, [....]). It must be more flexible to allow for the input of the DE results as generated by pertpy

  • [ ] The following must be parameterized

    "params": {
                "groupby": groupby,
                "reference": "rest",
                "method": "other",
                "use_raw": True,
                "layer": None,
                "corr_method": "other",
            },
    
  • [ ] Add tests accordingly

Zethson avatar Jan 06 '24 17:01 Zethson