moscot

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describe birth death process better

1

https://moscot.readthedocs.io/en/latest/notebooks/examples/problems/800_score_genes_for_marginals.html explain the parameters

MUCDK

Refactor: Maybe GW should inherit from FGW instead of vice versa

2

I was wondering if it would make more sense to inherit `GWProblem` from `FGWProblem` since FGW kind of includes GW in itself. This is a problem since when GW inherites...

selmanozleyen

When one gives both of them, one of them are overridden implicitly. We should throw an error when both is given.

selmanozleyen

Added function `compute_variance()` as well as a test, similar to `compute_entropy()`.

LeonStadelmann

adapt user guide once #643 is merged

MUCDK

Closes theislab/moscot#601. It's far from perfect since it's not yet possible to copy a problem after it was solved, but is a start. I used python's copy.deepcopy to copy the...

lautisilber

in the LR case the flag is raised despite convergence.

MUCDK

LineageProblem error

3

Hi there, I'm getting `ValueError: Unable to solve a quadratic problem with `alpha = 1` and `xy` supplied.` when trying to solve a `LineageProblem` with `alpha=1.0` and `joint_attr=None`.

Marius1311

No convergence with new commit of ottjax in LRGW solvers unless inner_iterations=10 is set

3

I am working on [this](https://github.com/theislab/moscot/pull/677) and I am solving problems with the new ottjax version. You can also see the tests that fail from the CI https://github.com/theislab/moscot/actions/runs/8361086332/job/22888306575#step:5:1934. The code that...

selmanozleyen

add geo link to moscot dataset pancreas

1

MUCDK