moscot issues

check for unrecognized in `solve` methods

enhancement

[pre-commit.ci] pre-commit autoupdate

updates: - [github.com/pre-commit/mirrors-mypy: v1.10.1 → v1.11.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.10.1...v1.11.0) - [github.com/asottile/pyupgrade: v3.16.0 → v3.17.0](https://github.com/asottile/pyupgrade/compare/v3.16.0...v3.17.0) - [github.com/rstcheck/rstcheck: v6.2.0 → v6.2.4](https://github.com/rstcheck/rstcheck/compare/v6.2.0...v6.2.4) - [github.com/astral-sh/ruff-pre-commit: v0.5.0 → v0.5.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.0...v0.5.5)

pre-commit-ci[bot]

output the raw cell transition data without aggregation

6

Hi, thank you for the amazing work! How could one output the raw cell transition data without aggregation? For example, in 200_cell_transitions.ipynb, is it possible to output the entire source...

Xian123123123

bug when using tp.compute_interpolated_distance

6

Hi I solved the OT problem for the sequential problem of this list of time points [0, 2, 4, 6, 8, 10, 12, 14] and i wonder when I want...

mbensouda

center scale for spatial normalization callback

1

- [ ] center scale spatial norm callback - [ ] remove skip for balanced/unbalanced test due to convergence flag requires latest ott-jax, wait for merging Closes: - https://github.com/theislab/moscot/issues/678 -...

giovp

Full rank initializers

Currently, we don't document that you can also pass a full-rank initializer. Maybe it's redundant, but this is to be discussed.

MUCDK

Add Elastic Costs again or asses if they are necessary or not

2

In this PR https://github.com/theislab/moscot/pull/725 I removed the Elastic cost functions since ottjax removed them with this commit: https://github.com/ott-jax/ott/commit/d5d8a4712dddd9b24d6906bee1ea3835f4e7ac13 We should decide what we are going to do about this

selmanozleyen

`.impute` consumes too much memory

3

I'm trying to call `problem.impute()` on a solved (linear) spatial mapping problem of dimensions `n_source=17806` (spatial data) by `n_target=13298` (single-cell data) for `n_genes=2039`. This is just a full-rank Sinkhorn problem...

Marius1311