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which cell is rejected

Open wangjiawen2013 opened this issue 2 years ago • 1 comments

Hi, I want to generate a plot similar to that in kBET paper: image Where can I get the results to indicate whether a cell is rejected or not ?

wangjiawen2013 avatar Jul 18 '23 07:07 wangjiawen2013

Hi @wangjiawen2013

thanks for the question! The kBET function returns a list of values, one of them is called results (see Usage of kBET function for details). This contains all p-values for all tested cells. You can classify into "Rejected" and "Not rejected" by thresholding those values with the alpha level you need (by default 0.05).

mbuttner avatar Jul 19 '23 16:07 mbuttner