ehrapy
ehrapy copied to clipboard
theislab
Electronic Health Record Analysis with Python.
### Description of feature Me again... Its fantastic that you already have the cohort tracker and table one features in ehrapy (those are super useful particularly for standardizing and objectifying...
### Description of feature Hi all, hope you made it until this one... One interesting functionality that might also be helpful to dig deeper into survival analysis is adjusting survival...
### Description of feature Hi all, one feature that might also help to uncover new biological insights within big heterogeneous datasets is to visualize the dependencies of variables investigated within...
### Description of feature Hi all, thanks for taking your time digging through my requests: Another important points (at least for clinicians, I will get to some more biology-focused features...
### Description of feature Hi all, me again.... Another very commonly used analysis in clinical data analysis are CoxPH models (and its great that you already implemented those!). Most commonly...
### Description of feature Hi all, thanks for all the previous help on the ehrapy features - you´re a great team! I have a couple of ideas that might help...
updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.5 → v0.6.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.6.5...v0.6.7)
![pre-commit-ci[bot] avatar](https://avatars.githubusercontent.com/in/68672?v=4 "pre-commit-ci[bot] avatar"){kind=avatar}
### Description of feature We are right now not testing the pass through calls of scanpy functions work smoothly. As we are using the public scanpy API and watch scanpy...
**PR Checklist** - [X] This comment contains a description of changes (with reason) - [X] Referenced issue is linked (closes #786) **Description of changes** - Updated CI tests to Python...
I had to `from scanpy.neighbors._types import KnnTransformerLike, _KnownTransformer` to make transformer argument of `neighbors()` consistent with scanpy. But _types is protected...
