ehrapy
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theislab
Electronic Health Record Analysis with Python.
### Description of feature https://github.com/adayim/consort supports branching off. We should also enable that somehow.
https://bmcmedresmethodol.biomedcentral.com/articles/10.1186/s12874-020-01180-y
https://github.com/synthetichealth/synthea We should try to wrap it in Python (while checking for JDK etc). Output default csv, but others should be supported as well. CC #102
### Description of feature Test more of the plotting functionalities. `matplotlib.testing.compare.compare_images` is super useful here. TODOs - [ ] clarify how much can be considered a good standard, needed and...
### Description of feature Plots slightly differ in what arguments are used to show/return/save, and how they work. E.g. -`ep.pl.ols() `takes a show argument, and returns an Axes object if...
### Description of feature There are two things could be improved for qc_lab_measurements 1. Adding more reference table. Currently there are only Clinical Laboratory reference values. Other reference values (like...
We recently implemented causal inference with dowhy. However, currently ehrapy has no module to also conduct causal discovery or in other words determine causal graphs on its own. It'd be...
### Description of feature Hi, the current move_to_x() in ehrapy doesn't copy .uns/.obsm/.varm from original adata. It would be great if all the original slots could be copied.
### Description of feature The last measurement carrying forward imputation strategy can be yet another imputation strategy worth to have at hand. A more detailed discussion on a case study...
### Description of feature We could implement the two-sample Kolmogorov-Smirnov test which we could use to test pre and post imputation distributions > We tested the null hypothesis considering that...