DiffusionMap: Error in duplicated.default(data) : duplicated() applies only to vectors

[MerRome]

Hello, thanks for the great tool!

I am running into the following error when calling DiffusionMap on a SingleCellExperiment Object:

dif_map <- DiffusionMap(sce) Error in duplicated.default(data) : duplicated() applies only to vectors

I think there is somewhere a conflict with different packages, but I am not sure how to fix it.

Thanks for your time! Best, Merrit

`R version 4.2.0 (2022-04-22) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 22.04 LTS

Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=de_AT.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=de_AT.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=de_AT.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=de_AT.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] destiny_3.10.0 SingleCellExperiment_1.18.0 SummarizedExperiment_1.26.1 Biobase_2.56.0
[5] GenomicRanges_1.48.0 GenomeInfoDb_1.32.2 IRanges_2.30.0 S4Vectors_0.34.0
[9] BiocGenerics_0.42.0 MatrixGenerics_1.8.0 matrixStats_0.62.0

loaded via a namespace (and not attached): [1] ggplot.multistats_1.0.0 tidyr_1.2.0 carData_3.0-5 assertthat_0.2.1 TTR_0.24.3
[6] sp_1.4-7 GenomeInfoDbData_1.2.8 robustbase_0.95-0 pillar_1.7.0 VIM_6.1.1
[11] lattice_0.20-45 glue_1.6.2 RcppEigen_0.3.3.9.2 XVector_0.36.0 colorspace_2.0-3
[16] Matrix_1.4-1 pkgconfig_2.0.3 zlibbioc_1.42.0 purrr_0.3.4 scales_1.2.0
[21] ranger_0.13.1 RSpectra_0.16-1 tibble_3.1.7 proxy_0.4-26 generics_0.1.2
[26] car_3.0-13 ggplot2_3.3.6 ellipsis_0.3.2 nnet_7.3-17 hexbin_1.28.2
[31] cli_3.3.0 magrittr_2.0.3 crayon_1.5.1 laeken_0.5.2 fansi_1.0.3
[36] MASS_7.3-57 xts_0.12.1 class_7.3-20 ggthemes_4.2.4 tools_4.2.0
[41] data.table_1.14.2 smoother_1.1 lifecycle_1.0.1 stringr_1.4.0 munsell_0.5.0
[46] RcppHNSW_0.3.0 irlba_2.3.5 DelayedArray_0.22.0 pcaMethods_1.88.0 compiler_4.2.0
[51] e1071_1.7-9 vcd_1.4-9 rlang_1.0.2 grid_4.2.0 RCurl_1.98-1.6
[56] bitops_1.0-7 boot_1.3-28 gtable_0.3.0 codetools_0.2-18 curl_4.3.2
[61] abind_1.4-5 DBI_1.1.2 R6_2.5.1 zoo_1.8-10 knitr_1.39
[66] dplyr_1.0.9 utf8_1.2.2 stringi_1.7.6 Rcpp_1.0.8.3 vctrs_0.4.1
[71] scatterplot3d_0.3-41 DEoptimR_1.0-11 tidyselect_1.1.2 xfun_0.31 lmtest_0.9-40 `