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Question: Can DC1 be well correlated to PC1?

Open katsikora opened this issue 3 years ago • 0 comments

Dear Devs,

I have applied destiny::DiffusionMap to one of our internal datasets, providing the Seurat "data" slot normalized in a standard way as input (log2 (normalized counts + pseudocount)).

When I plot DC1 against PC1 on this dataset, I obtain:

PC1_vs_DC1

Does this say anything particular about the dataset?

Thanks in advance for any hints,

Best,

Katarzyna

katsikora avatar Sep 10 '20 14:09 katsikora