dca
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theislab
Deep count autoencoder for denoising scRNA-seq data
I installed the latest conda (conda 4.8.0). I cannot install dca successfully. (dca) xxx:~$ conda install -c bioconda dca Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...
Hello, I tried to use the --denoisesubset option, using a .txt file of circa 100 genes. When I run dca on my data with the option, I get the following...
Hello, Thank you for developing this package! I am able to run it with mode='latent', but not with mode='denoise'. I have tried installing different versions of numpy and tensorflow, but...
How to make the output file has the same dimension with the input file? Don't remove the zero-expression genes or cells.
goodmornig. Thanks for this work, how can i use a dca pre-trained model for a differnt dataset?
I'm getting the following error when running DCA. Any idea what might be causing this?
Dear author, Thanks for developing the software! I have a few questions but did not find clear answer from your paper: 1. is the input a count matrix? 2. is...
Hi, thanks for making the source code available. The "reproducibility" folder is also great. Regarding using DCA to perform hyperparameter search, isn't this same command supposed to produce a mean.tsv...
Hi, Thanks a lot for the paper and the package. I'm new to neural network. I have a few questions: 1. When mode='latent', we are able to get the bottleneck...
For large datasets, e.g. [1.3 million cells in mousr brain dataset](https://community.10xgenomics.com/t5/10x-Blog/Our-1-3-million-single-cell-dataset-is-ready-to-download/ba-p/276) is there a support for [h5 format](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/advanced/h5_matrices)? Thanks
