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theislab
Deep count autoencoder for denoising scRNA-seq data
When I click on 'tutorial' in 'See our manuscript and tutorial for more details.', 'This page is currently unavailable' and 'nbviewer.ipython.org has been redirected too many times' appear. ’ Is...
If I run scanpy.external.pp.dca with default parameters, do I still need to perform normalization, scaling, and log1p afterward? How can I obtain the non-normalized values? scanpy.external.pp.dca(adata, mode='denoise', ae_type='nb-conddisp', normalize_per_cell=True, scale=True,...
DCA is currently incompatible with recent versions of tensorflow. This PR increases compatibility to tf>=2.0,
Hi DCA developers I am writing this as a humble request to fix the dca dependency issue related to tensorflow and keras. It seems like a never ending cycle of...
Hi, The link within `reproducibility/download.sh` seems not working. Would you mind updating the link for reproduction purpose?
When I saw 'Readme', it gived me the sense that it's a package. However, it seems not provide the methods of how to use it. Besides, when I try to...
I guess latent.tsv is reduced.tsv in readme.md. I wonder where pi.tsv is. My result folder only contains mean, dispersion and latent. Thanks!
hello! when I'm running what you provided`[tutorial.ipynb](https://github.com/theislab/dca/blob/master/tutorial.ipynb)`，my RStudio prompts me with the following error: ``` > source("D:/RHome/smi/dca_tutorial.R") Getting parameters... Creating simulation object... Simulating library sizes... Simulating gene means... Simulating group...
Thank you for the package! I'd like to get your opinion on the use of scVI together with DCA. Is it recommended? From my understanding, DCA uses latent representation to...
