FASTK

FASTK copied to clipboard

Hi, @thegenemyers Can fastk use the `pigz` for parallel gzipping large fastq?

baozg

Fix fwrite() error handling and other minor build fixes

5

Prevent a warning by fixing the error handling on one of the `fwrite()` calls. Also remove generated files in _HTSLIB/*_ and add to _Makefile_ so that it regenerates _HTSLIB/htslib_static.mk_ if...

jmarshall

Segfault for FastK, sometimes, when k isn't 40

19

synopsis: When running FastK with -k set 32 or less, I'm seeing segfaults. Specifically, I've seen this with one particular input file (the blue whale assembly) and k in {20,26,31,32}....

rsharris

Is there any method to convert "jellyfish count"/"KMC count" or "jellyfish dump" format to FastK db format?

zhk2017

I followed the example 2 for hpc operations as I got an `not enough disk space error` when running fastk in single instance. I completed the commands`fastk` and `fastmerge` and...

AlcaArctica

Merged libraries do not show lower-count k-mers

1

Dear Gene, I have a large sequencing library that I needed to split into 10 smaller files so I could run `FastK` on different nodes. Following the instructions in the...

bnavarrodominguez

To successfully compile with clang 18, I needed to add: #define _GNU_SOURCE to ONElib.c No other change required. There may of course be a better way to address the issue?...

OH-AU

I have three pairs .fq file, such as A_1.fq, A_2.fa, B_1.fa, B_2.fq, C_1.fq, C_2.fa. The three pairs fq file was generated by three times 350bp library construction. how do I...

renmiaozhen