FASTK
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thegenemyers
A fast K-mer counter for high-fidelity shotgun datasets
Dear Gene, thanks for making FASTK! Would you consider making FASTK available also via conda? I tried to compile it on our cluster, run into some errors and I bet...
Hi, I created a PR to enable GitHub Actions CI for this repository. The CI log on my forked repository is [here](https://github.com/junaruga/FASTK/runs/8163996647?check_suite_focus=true). For the libraries to build bundled htslib, I...
I want to understand how kmers are counted in FastK and how that affects the totals in merquryFK calculations. Why do the total values in completeness.stats and qv files differ...
As I couldn't see the FASTK's Docker container, I created it by myself. Feel free to take the file if you like. https://gist.github.com/junaruga/dd71378add9fb8e840dad65bb050bf0d https://quay.io/repository/junaruga/garg-fastk?tab=info Note we are using the container...
Hello, On the latest master f18a4e6d2207539f7b84461daebc54530a9559b0 , I was trying to test the `FastK` with a small test data. Then I got the following Segmentation fault. Do you have any...
Granted, this is a stupid mistake on my part. I created a file named sorang.telomeric.fasta but in fact it was a gzipped file. The first two byes of the file...
Hello, Thanks for FastK, it is truly useful. I'm looking at kmer coverage of contigs of a small assembly. It means that if I want to get kmer coverage/histogram for...
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A fast K-mer counter for high-fidelity shotgun datasets