DALIGNER

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LAsort Issue when called from daligner

2

I am seeing current version of LAsort failing when called from daligner. As a workaround, I have been using an older version of LAsort. ie (dentistenv) [randy.bradley@ceres18-mem-2 workdir]$ daligner -I...

BradleyRan

LAsort: segfault with automatic de-dup'ing

2

The changes from 477d5b92459c7e22baf2e15af712b70ee54c838b introduced a serious bug into `LAsort` that causes a segfault. The code crashes in [`LAsort.c:377`](https://github.com/thegenemyers/DALIGNER/blob/477d5b92459c7e22baf2e15af712b70ee54c838b/LAsort.c#L377). When compiling with `-fsanitize=address -fsanitize=undefined` the sanitizer reports many misaligned accesses...

a-ludi

Fix typo writing to stdout

2

With "-f" flag, the "rm *.las" lines went to stdout rather than into ".RM.OPT" script.

pb-cdunn

This allows for passing additional compiler/linker flags from the command line by supporting standard variables like CPPFLAGS, CFLAGS, and LDFLAGS. It also saves a good amount of redundant typing. This...

0xaf1f

As first identified in [Debian bug #1066534], DALIGNER fails to build from source when compiled with -Werror=implicit-function-declaration. This change ensures the definition of vasprintf is appropriately loaded from the standard...

emollier

emollier

Since gcc 14, incompatible pointer type casting is now an error. In the case of daligner, the build results in the following errors: ONE2LA.c:135:13: error: assignment to ‘int64 *’ {aka...

emollier