pyjip

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Release 0.5 breaks with some python recursivity problem

1

Whenever trying to run a tool or pipeline I get the following error: Exception RuntimeError: 'maximum recursion depth exceeded while calling a Python object' in ignored The same tool/pipelines runs...

lfrias81

thasso

Command: ``` jip run --dry MethRep.jip -i test_files/all.mult_diff.map -r test_files/rmsk.clean.bed -b TEST ####################################################################################### | Pipeline Configuration | +--------------------------------+----------------------------------------------------+ | Name | Value | +================================+====================================================+ | input | test_files/all.mult_diff.map | |...

marcDabad

There should be a `post-validate` hook that can be expressed as a block and that can raise an exception or exit with 1 in order to fail a job even...

thasso

thasso

thasso

Allow enabling the argparse raw formatter

thasso

I want to be able to create a set of jobs with dependencies that are joined into a single job on the cluster

thasso