tetomonti
tetomonti
Wondering how easy/difficult would be to add a progress bar when running `CaDrA::topn_eval` or even simply the `candidate_search` function.
Test permutation test on yap/taz vignette, and add to vignette.
When installing: `devtools::install_github("montilab/CaDrA",ref="dev")` Or loading: `library(CaDrA)` I get the following warning (on my Mac): Warning in fun(libname, pkgname) : couldn't connect to display "/private/tmp/com.apple.launchd.ArCZPD0Xid/org.macosforge.xquartz:0" Or this (on SCC): Warning message:...
Add a check that the column headers of the csv file containing the input file paths must be named _exactly_ `Sample_Name`,`Read1`,`Read2` If they don't, the pipeline will fail w/o a...
Check reads is way too slow, but I think necessary. We need to look into how to make it more efficient.
The output expression matrix has the column headers corresponding to the fastq file names rather than the ‘Sample_Name’ in the input file. It should be the latter.
The data table returned by hypeR includes in the hits column the names of the features (genes) separated by commas. To make it more robust, these names should be quoted,...
When assigning a rgsets object to a new variable, this variable is only a reference to the old object, not a new one. Here is an example: ``` # genesets...
[Note: I'm adding the content of my email here for record keeping] The reason revealer returns a signed MI is because it multiplies the actual MI by the sign of...
The description of the return value should be clarified. At the moment it reads as: @return a list of key parameters that are used to cache the result of #'...