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TG2-VALIDATION_PHYLUM_FOUND

Open iDigBioBot opened this issue 7 years ago • 3 comments

TestField Value
GUID eaad41c5-1d46-4917-a08b-4fd1d7ff5c0f
Label VALIDATION_PHYLUM_FOUND
Description Does the value of dwc:phylum occur at rank of Phylum in the bdq:sourceAuthority?
TestType Validation
Darwin Core Class dwc:Taxon
Information Elements ActedUpon dwc:phylum
Information Elements Consulted
Expected Response EXTERNAL_PREREQUISITES_NOT_MET if the bdq:sourceAuthority is not available; INTERNAL_PREREQUISITES_NOT_MET if dwc:phylum is bdq:Empty; COMPLIANT if the value of dwc:phylum is found as a value at the rank of Phylum in the bdq:sourceAuthority; otherwise NOT_COMPLIANT
Data Quality Dimension Conformance
Term-Actions PHYLUM_FOUND
Parameter(s) bdq:sourceAuthority
Source Authority bdq:sourceAuthority default = "GBIF Backbone Taxonomy" {[https://doi.org/10.15468/39omei]} {API endpoint [https://api.gbif.org/v1/species?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&name=]}
Specification Last Updated 2022-03-25
Examples [dwc:phylum="Tracheophyta": Response.status=RUN_HAS_RESULT, Response.result=COMPLIANT, Response.comment="dwc:phylum has an equivalent at the rank of Phylum in the bdq:sourceAuthority. GBIF.org uses Trachyophyta for the Phylum including ferns"]
[dwc:phylum="Trachyophyta": Response.status=RUN_HAS_RESULT, Response.result=NOT_COMPLIANT, Response.comment="dwc:phylum does not have an equivalent at the rank of Phylum in the bdq:sourceAuthority."]
Source iDigBio
References
  • GBIF Secretariat (2023) GBIF Backbone Taxonomy. Checklist dataset. https://doi.org/10.15468/39omei
Example Implementations (Mechanisms) Kurator/FilteredPush sci_name_qc Library
Link to Specification Source Code https://github.com/FilteredPush/sci_name_qc/blob/v1.1.2/src/main/java/org/filteredpush/qc/sciname/DwCSciNameDQ.java#L134
Notes The purpose of this test is to check whether the value is a name that is a result of a nomenclatural act at this rank. This excludes unpublished names, misspellings and vernacular names. It is expected that the test will designate the source authority against to check. The same test might return distinct results when using distinct source authorities.

iDigBioBot avatar Jan 05 '18 15:01 iDigBioBot

Corrected typo in description s/gphylum/phylum/ "Does the value of dwc:gphylum occur at rank of Phylum in bdq:sourceAuthority?"

chicoreus avatar Jun 06 '22 19:06 chicoreus

Amended Source Authority values to align with @chicoreus syntax

From

bdq:sourceAuthority default = "GBIF Backbone Taxonomy" [https://doi.org/10.15468/39omei] | | | API endpoint [https://api.gbif.org/v1/species?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&name=]

to

bdq:sourceAuthority default = "GBIF Backbone Taxonomy" {[https://doi.org/10.15468/39omei]} {API endpoint [https://api.gbif.org/v1/species?datasetKey=d7dddbf4-2cf0-4f39-9b2a-bb099caae36c&name=]}

Tasilee avatar Jul 04 '23 23:07 Tasilee

Splitting bdqffdq:Information Elements into "Information Elements ActedUpon" and "Information Elements Consulted"

Tasilee avatar Sep 16 '23 03:09 Tasilee