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[Feature] add an option to let taxpasta report relative abundance as fractions instead of only counts

Open Midnighter opened this issue 6 months ago • 1 comments

Is there an existing issue for this?

  • [X] I have searched the existing issues

Problem description

See discussion on Slack reported by @AmaliT.

The following config causes errors:

motus_use_relative_abundance:true
motus_save_mgc_read_counts:true

Code sample

             CRITICAL   schema_context      column           check    merge.py:424
                      check_number failure_case index                             
                      0         Column  read_count  dtype('int64')                
                      None      float64  None  

Environment

taxprofiler pipeline

Anything else?

No response

Midnighter avatar Jan 02 '24 11:01 Midnighter