Thomas Athey

weird, it works for me. If I remember correctly, you are on windows, while jacopo and i are on mac. Maybe it has something to do with paths. For example,...

what about if you use forward slashes for prefix instead of backslashes? i.e. prefix = "brainlit/axon_geometry/brain1/segments_swc"

@JacopoTeneggi Any reason why we need to use os.path to make the s3 path? Can prefix just be hardcorded?

I would recommend starting from the benchmarking data first. Beyond just AUCs, you should also set up code that makes it possible to visualize (e.g. in napari, vaa3d) the algorithms'...

modified circleci config so forks only test `black` formatting and all pytests except those in the `utils` module. utils pytests, and codecov are only run for branches. Thus, the checks...

Is there any reason to keep this open? @bvarjavand

More specifically, lets have the random edge function run according to the inputs "number of new edges" (which I think is clear what it does) and "proximity bias" (which should...

hey @mlemyco are there any links or results you could put here that indicate your progress on this issue? Since you are no longer working on this i'm thinking of...

@bvarjavand do you wana take the notebook strip check task? (the third one)

https://github.com/neurodata/CloudReg specifically, stitching.py