TanZhengTang

A problem about "ValueError: cannot convert float NaN to integer"

7

Hello,I meet a question when I run AA for getting data. The AmpliconArchitect version is 1.2 my command: python /home/tang/tools/AmpliconArchitect/src/AmpliconArchitect.py --bed ../NCI-H716_AA_CNV_SEEDS.bed --bam ../NCI-H716_hg38_align_sort_rmdup.bam --downsample 0 --out NCI-H716_ecDNA --ref GRCh38...

The bed file for AA is 0 size after running PrepareAA

2

Hello,I meet a question about prepare the bed file for AA. my command: python /home/tang/tools/PrepareAA/PrepareAA.py -s A549 -t 4 --cnvkit_dir /home/tang/tools/cnvkit/cnvkit.py --sorted_bam /home/tang/A549/align_data/low_depth_A549_hg19_align_sort_rmdup.bam --ref hg19 -o ./ --python3_path /home/tang/miniconda3/envs/ecDNA/bin/python the...

A question about running amplified_intervals.py

24

Dear Dr.Viraj I am trying to use AA for following your work to produce ecDNA data.When I run the amplified_intervals.py to produce the bed file which AA need,bad things happend....