Re@jinxin112233_ALLHIC_corrector

[lilyynu]

          Hi @jinxin112233 

A1: You can use bwa mem and samtools sort to generate the sorted bam file. A2: seq.fasta is the draft contig file that was assembled by PacBio/Nanopore assemblers. A3: Yes, seq.correct2.fasta is the corrected contig file that can be used for further Hi-C scaffolding. ALLHiC_corrector utilized the core algorithm from 3D-DNA to correct initial contig level assembly, but was improved at speed. I will update the wiki once I get a chance.

Originally posted by @tangerzhang in https://github.com/tangerzhang/ALLHiC/issues/68#issuecomment-731881751