tamsen

Hi there, I am sorry again for being late in getting back to you... its been busy. I reproduced your command and (of course) it all worked for me. I...

Hi, Do you normally omit the "dotnet" ? Do other Pisces programs work for you? Normally calling "dotnet" is the first part of the command structure. Yes, go ahead and...

Hi, Hm, so how about we take your unusual configuration out of the equation for a moment? Can you please install dotnet and CreateGenomeSizeFile 5.2.9.122 natively on a linux box...

Hi! It doesn't matter. Just have the format match the recommendation in the help. ie, "imaginary species (build2014)" would work.

I dont know a program. I'd probably just script it. GT:GQ:AD:DP:VF:NL:SB 0/1:100:6978,4274:11252:0.380:20:0.0000 So in your vcf, you see data like the above. In this case, the "0.380" is your variant...

Hi there, Yes, I talked to the team and I think we can do this for you with our next release, but we need to test it internally first. We...

Hi Deric, I see fastq on the public data. For completeness, can you pls send me the exact bwa-mem cmd line used to make the bams you have? Testing the...

thank you!

Update, this is checked in now to our internal dev branch. In our next release (5.2.10) we will allow unanchored indels. We will just warn and continue processing.

hi! this issue should now be resolved in 5.2.10. Let us know if you still have issues.