Can I remove tip labels from tanglegram?

[TreeT2]

Is is possible to have no tip labels when plotting a tanglegram?

[talgalili]

There is no official parameter, but this can be done using the margin_inner parameter.

Here is an example:

## Not run: 
set.seed(23235)
ss <- sample(1:150, 10 )
dend1 <- iris[ss,-5] %>% dist %>% hclust("com") %>% as.dendrogram
dend2 <- iris[ss,-5] %>% dist %>% hclust("sin") %>% as.dendrogram
dend12 <- dendlist(dend1, dend2)

dend12 %>% tanglegram

tanglegram(dend1 , dend2, margin_inner = 0.5)

[TreeT2]

Thanks Tal.

[TreeT2]

Only got about to trying this out lately and margin_inner = 0.5 does not work, but dLeaf=1 worked for me.

[talgalili]

Could you please share the fig you got and the sessionInfo() ?

[TreeT2]

The is similar as above Ill try to make a reproducible example later. but for sessionInfo() gives: Ive a few other phylo packages in my session.

R version 3.4.0 (2017-04-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base

other attached packages: [1] data.table_1.10.4 plyr_1.8.4 dplyr_0.7.1 gtools_3.5.0
[5] tidyr_0.6.3 DECIPHER_2.4.0 RSQLite_2.0 Biostrings_2.44.1
[9] XVector_0.16.0 IRanges_2.10.2 S4Vectors_0.14.3 BiocGenerics_0.22.0 [13] dendextend_1.5.2 phangorn_2.2.0 ape_4.1 ggtree_1.8.1
[17] treeio_1.0.2 ggplot2_2.2.1

loaded via a namespace (and not attached): [1] mclust_5.3 Rcpp_0.12.11 mvtnorm_1.0-6 lattice_0.20-35 class_7.3-14
[6] assertthat_0.2.0 digest_0.6.12 R6_2.2.2 zlibbioc_1.22.0 rlang_0.1.1
[11] lazyeval_0.2.0 diptest_0.75-7 whisker_0.3-2 blob_1.1.0 kernlab_0.9-25
[16] Matrix_1.2-9 labeling_0.3 igraph_1.0.1 bit_1.1-12 munsell_0.4.3
[21] compiler_3.4.0 pkgconfig_2.0.1 nnet_7.3-12 tibble_1.3.3 gridExtra_2.2.1
[26] quadprog_1.5-5 viridisLite_0.2.0 MASS_7.3-47 grid_3.4.0 nlme_3.1-131
[31] jsonlite_1.5 gtable_0.2.0 DBI_0.7 magrittr_1.5 scales_0.4.1
[36] viridis_0.4.0 flexmix_2.3-14 bindrcpp_0.2 robustbase_0.92-7 rvcheck_0.0.8
[41] fastmatch_1.1-0 tools_3.4.0 fpc_2.1-10 bit64_0.9-7 glue_1.1.1
[46] trimcluster_0.1-2 DEoptimR_1.0-8 colorspace_1.3-2 cluster_2.0.6 prabclus_2.2-6
[51] memoise_1.1.0 bindr_0.1 modeltools_0.2-21

[talgalili]

Thanks, I see you're using the latest dendextend version. A reproducible example will help. I can also think of adding a "show_labels" parameter to control this more directly. Once you get the example ready, I'll add this feature and we can see how it looks.

Cheers, Tal