protlearn
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tadorfer
A Python package for extracting protein sequence features
Hello. I've found this library very useful, but have recently noticed a bug. When calculating the ctd features I noticed differing results with the same list of sequences. Looking further...
Hi Thomas!!! Thank you so much for ProtLearn, is very useful. I installed it on google Colab (and local on my PC) using: pip install protlearn pip install --upgrade protlearn...
Hi, I find protlearn very handy in extracting protein sequence features. All functions of dimensionality_reduction work except for sequential, rfe and lda. I hope you will be able to reproduce...
**State the module for which you would like to request a new feature** features **Describe the solution that you envision** It would be great to get the list of features...
- enable AAIndex1-based properties on top of hydrophobicity and hydrophilicity
Make it optional to choose the sum or mean of all amino acid properties in the sequence
Instead of taking the mean of amino acid properties over the whole sequence, do a sliding window approach to introduce some locality to stretches of amino acids in the sequence.
Transform amino acids into their evolutionarily similar states