Tobias Neumann

icon indicating a website link https://t-neumann.github.io

icon company @IMPIMBA @ZuberLab @ObenaufLab icon location Vienna icon location CompBio x Drug Discovery, Space exploration enthusiast

Results 13 issues of Tobias Neumann

Faulty bed parser

Currently an exception is thrown for a 3-column bed file (no strand info). Also, if there's an empty line in the end there's an exception thrown.

bug

cnvkit seg export noise filtered by GISTIC2

2 comment

Hi, I don't know if this is actually a problem of the `cnvkit seg export` function or `GISTIC2`, but due to the lack of some GISTIC2 issue repository, I decided...

help wanted

None barcode

12 comment

Hi, I have a very puzzling demultiplexing problem which I have no idea why it occurs. I have a couple of nanopore reads with bc1, bc2, bc3 but when I...