scrublet
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swolock
Detect doublets in single-cell RNA-seq data
Dear scrublet developer, I'm using srublet to detect doublets in my scRNA-seq sample. I've successfully used it in other samples but one that causes the following error. I'm wondering if...
Hi there, First of all thank your for this very powerful and useful tool. As I am looking for new quality control metrics, I tested scrublet and it works perfectly...
Hello, I am unable to get scrublet to load the genes.tsv file. I see the following attribute error: > AttributeError: module 'scrublet' has no attribute 'load_genes' I have renamed the...
Just a suggestion. It seems that many users process scRNA-seq data using R and are not so familiar with Python. So is it possible to make a R version of...
Dear scrublet developers, Thank you for giving us such wonderful tool! Based on principle of doublet finder tools algorithm, I'm wondering whether scrublet will mistakenly consider developmental intermediate cell type...
First of all, thank for scrublet! I have been using for a while now, and much prefer it over the alternatives. As for the issue, it's a bit niche but...
Hi I have been trying to install Scurblet on a Ubuntu system, but keep having issue with the annoy package. Similar issues seem to persist for me on a Windows...
Hello everyone. I always thanks to this marvelous module! Recently I got some unseen error. I tried ``` import scrublet as scr scrub = scr.Scrublet(adata.raw.X) adata.obs['doublet_scores'], adata.obs['predicted_doublets'] = scrub.scrub_doublets() ```...
I'm seeing a weird bug where all of my figures disappear when I run Scrublet. It comes with this error message: ``` UserWarning: Matplotlib is currently using agg, which is...
Scrublet is installed normally, but cannot run.... Python 3.8.5 (default, Sep 4 2020, 07:30:14) [GCC 7.3.0] :: Anaconda, Inc. on linux Type "help", "copyright", "credits" or "license" for more information....
