scATAC data

[TheSallyGardens]

Hi there, Thanks for a great tool! Can I use this tool to predict the data of scATAC?

[swolock]

Hi @TheSallyGardens,

I haven't worked with scATAC-seq data and am not very familiar with the standard approaches for its analysis. I think that Scrublet's basic strategy could be used to predict doublets in scATAC-seq data, but it would probably require some modifications (e.g., in normalization, feature filtering, and decomposition).

Is there a standard analysis package that you use to analyze scATAC-seq data?

[TheSallyGardens]

Hi @TheSallyGardens,

I haven't worked with scATAC-seq data and am not very familiar with the standard approaches for its analysis. I think that Scrublet's basic strategy could be used to predict doublets in scATAC-seq data, but it would probably require some modifications (e.g., in normalization, feature filtering, and decomposition).

Is there a standard analysis package that you use to analyze scATAC-seq data?

Thank you for your answer.I'm also looking for this kind of software.