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Add complete runnable BulkRNA-BERT TCGA survival example with all data

Open jlinecodes opened this issue 1 month ago • 0 comments

Fully self-contained BulkRNA-BERT reproduction example:

  • bulk_rna_bert_tcga_survival.py (complete script with model, ablations, plots)
  • All 8 required real TCGA files included in examples/
  • Runs immediately on free Google Colab or locally (<15 min)
  • Includes C-index, Kaplan-Meier, heatmaps, dendrograms, and required test
  • Zero setup needed — perfect reproducibility

jlinecodes avatar Dec 08 '25 02:12 jlinecodes