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Published 20 hours ago • verified publisher icon strohel

Trying to install on Mac - TypeError

Open handloomweaver opened this issue 9 years ago • 2 comments

running test running build running build_py creating build creating build/lib.macosx-10.8-x86_64-2.7 creating build/lib.macosx-10.8-x86_64-2.7/ceygen copying ceygen/init.py -> build/lib.macosx-10.8-x86_64-2.7/ceygen creating build/lib.macosx-10.8-x86_64-2.7/ceygen/tests copying ceygen/tests/init.py -> build/lib.macosx-10.8-x86_64-2.7/ceygen/tests copying ceygen/tests/main.py -> build/lib.macosx-10.8-x86_64-2.7/ceygen/tests copying ceygen/tests/support.py -> build/lib.macosx-10.8-x86_64-2.7/ceygen/tests copying ceygen/core.pxd -> build/lib.macosx-10.8-x86_64-2.7/ceygen copying ceygen/dtype.pxd -> build/lib.macosx-10.8-x86_64-2.7/ceygen copying ceygen/elemwise.pxd -> build/lib.macosx-10.8-x86_64-2.7/ceygen copying ceygen/llt.pxd -> build/lib.macosx-10.8-x86_64-2.7/ceygen copying ceygen/lu.pxd -> build/lib.macosx-10.8-x86_64-2.7/ceygen copying ceygen/reductions.pxd -> build/lib.macosx-10.8-x86_64-2.7/ceygen running build_ext Compiling ceygen/core.pyx because it changed. Compiling ceygen/dtype.pyx because it changed. Compiling ceygen/elemwise.pyx because it changed. Compiling ceygen/llt.pyx because it changed. Compiling ceygen/lu.pyx because it changed. Compiling ceygen/reductions.pyx because it changed. Compiling ceygen/tests/bench.pyx because it changed. Compiling ceygen/tests/test_core.pyx because it changed. Compiling ceygen/tests/test_dispatch.pyx because it changed. Compiling ceygen/tests/test_dtype.pyx because it changed. Compiling ceygen/tests/test_elemwise.pyx because it changed. Compiling ceygen/tests/test_llt.pyx because it changed. Compiling ceygen/tests/test_lu.pyx because it changed. Compiling ceygen/tests/test_reductions.pyx because it changed. Cythonizing ceygen/core.pyx Cythonizing ceygen/dtype.pyx warning: ceygen/dtype.pyx:16:4: Unreachable code warning: ceygen/dtype.pyx:18:4: Unreachable code warning: ceygen/dtype.pyx:20:4: Unreachable code warning: ceygen/dtype.pyx:22:4: Unreachable code warning: ceygen/dtype.pyx:24:4: Unreachable code Cythonizing ceygen/elemwise.pyx Cythonizing ceygen/llt.pyx Cythonizing ceygen/lu.pyx Cythonizing ceygen/reductions.pyx Cythonizing ceygen/tests/bench.pyx Traceback (most recent call last): File "setup.py", line 59, in 'Topic :: Software Development :: Libraries :: Python Modules', File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line 152, in setup dist.run_commands() File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/Users/almacmillan/Sites/raptor2/raptor2/Ceygen/support/dist_cmd_test.py", line 31, in run self.run_command('build') # build if not alredy run File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build.py", line 127, in run self.run_command(cmd_name) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py", line 326, in run_command self.distribution.run_command(command) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/Users/almacmillan/Sites/raptor2/raptor2/Ceygen/support/dist_cmd_build_ext.py", line 45, in run annotate=self.annotate, force=self.force, build_dir=self.build_temp) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Build/Dependencies.py", line 785, in cythonize cythonize_one(_args[1:]) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Build/Dependencies.py", line 885, in cythonize_one result = compile([pyx_file], options) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 608, in compile return compile_multiple(source, options) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 586, in compile_multiple result = run_pipeline(source, options, context=context) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 433, in run_pipeline err, enddata = Pipeline.run_pipeline(pipeline, source) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Pipeline.py", line 328, in run_pipeline data = phase(data) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Pipeline.py", line 52, in generate_pyx_code_stage module_node.process_implementation(options, result) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/ModuleNode.py", line 109, in process_implementation self.generate_c_code(env, options, result) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/ModuleNode.py", line 326, in generate_c_code self.body.generate_function_definitions(env, code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 394, in generate_function_definitions stat.generate_function_definitions(env, code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 394, in generate_function_definitions stat.generate_function_definitions(env, code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 4146, in generate_function_definitions self.body.generate_function_definitions(self.scope, code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 394, in generate_function_definitions stat.generate_function_definitions(env, code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 2861, in generate_function_definitions FuncDefNode.generate_function_definitions(self, env, code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 1798, in generate_function_definitions self.generate_function_body(env, code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 1567, in generate_function_body self.body.generate_execution_code(code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 400, in generate_execution_code stat.generate_execution_code(code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 5697, in generate_execution_code self.body.generate_execution_code(code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 400, in generate_execution_code stat.generate_execution_code(code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 6033, in generate_execution_code self.body.generate_execution_code(code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 6475, in generate_execution_code fresh_finally_clause().generate_execution_code(code) File "/Users/almacmillan/.virtualenvs/coachfairer/lib/python2.7/site-packages/Cython/Compiler/Nodes.py", line 6463, in fresh_finally_clause node_copy = copy.deepcopy(node) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 230, in _deepcopy_list y.append(deepcopy(a, memo)) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 230, in _deepcopy_list y.append(deepcopy(a, memo)) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 230, in _deepcopy_list y.append(deepcopy(a, memo)) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 230, in _deepcopy_list y.append(deepcopy(a, memo)) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 334, in _reconstruct state = deepcopy(state, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 163, in deepcopy y = copier(x, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 257, in _deepcopy_dict y[deepcopy(key, memo)] = deepcopy(value, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 190, in deepcopy y = _reconstruct(x, rv, 1, memo) File "/usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy.py", line 329, in _reconstruct y = callable(_args) File "/Users/almacmillan/.virtualenvs/coachfairer/bin/../lib/python2.7/copy_reg.py", line 93, in newobj return cls.new(cls, *args) TypeError: object.new(cStringIO.StringO) is not safe, use cStringIO.StringO.new()

handloomweaver avatar Apr 21 '15 16:04 handloomweaver

I get the same on Linux. It is because the timing module in the benchmark is not thread safe, and cannot be used inside prange. I am working on a fix.

Dapid avatar Sep 17 '15 16:09 Dapid

I get the same on Linux. It is because the timing module in the benchmark is not thread safe, and cannot be used inside prange. I am working on a fix.

Oh nice, pull requests welcome. :)

strohel avatar Sep 17 '15 16:09 strohel