Steven Weaver

Contents of the patch ``` From 0348efc8e8725d618d50d99ae9ffa91fc717b392 Mon Sep 17 00:00:00 2001 From: Steven Weaver Date: Wed, 25 Oct 2023 19:06:33 -0600 Subject: [PATCH] remove_config_library --- setup.py | 21 ---------------------...

I was able to get further today, but something is definitely wrong. ``` package: name: pysam version: 0.22.0 top-level: - pysam source: url: https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz sha256: ab7a46973cf0ab8c6ac327f4c3fb67698d7ccbeef8631a716898c6ba01ef3e45 patches: - patches/0001-remove_config_library.patch requirements:...

When I remove those items, I receive the same errors as in comment https://github.com/pyodide/pyodide/pull/2115#issuecomment-1782175551. For clarity, I'm using the `pyodide` executable that is installed with `pip`. ``` /Users/sweaver/Programming/hivtrace/env311/bin/pyodide ``` I'm...

OK, I rebuilt my environment in macOS Sonoma 14.1 using an Apple M1 Max. I was able to follow the Github Actions workflow to mimic and build `pyodide` to spec...

OK, now that I'm confident that it isn't something to do with `pyodide`, I'll keep digging. I believe it's an issue with a call to `make` made in their setup.py...

I got pysam to compile. Let me clean things up and test it out then will submit a new PR.

Dear @LesterJP, After reviewing the system logs, this issue appears to be anomalous behavior. Your results can be viewed at http://vision.hyphy.org/aBSREL?resultsUrl=https://data.hyphy.org/web/datamonkey/662333cccc6c1a3e32b5e7c5.ABSREL.json Thank you for reporting this, and please let us...

I consent.

Dear @gaurav, Yes, I think having an option to turn that off is a good idea. Best, Steven

Dear @pedrogiroldo, You'll need to include the CSS somehow in order for the tree to render correctly, located here https://github.com/veg/phylotree.js/blob/master/phylotree.css. As far as the second issue, I might need to...