Steve Walker
Steve Walker
- [x] description of kernel methods in https://canmod.github.io/macpan-book/examples.html#hello-world-simulating-an-sir-model - [x] Normalized parameter time-series methods -- https://github.com/mac-theobio/McMasterPandemic/blob/8b1a0373f9b9ba88c58dc32e8188157f6a2a8078/R/flexmodel_parameters.R#L173 - [ ] Clean up the description - [ ] SIR example with time-varying...
## Context I'm building R0 functionality in the TMB engine and have been doing sanity checks by comparing the results using the TMB engine with those using the R engine....
Modify simple Convergence chapter example so that it is more realistic -- SIR with outliers in I and no access to S Modify TMB Engine Chapter so that it continues...
Proposal: - use `create_*` when adding a component to a model that doesn't yet have that component - use `replace_*` when overwriting an existing component - use `append_*` for 'list...
after stochasticity is added to any variable in the `simulation_history`, there should be the option to add cumulative sums of any variable in the `simulation_history` (e.g. `cumRep` in classic macpan)
Right now make_state is a separate function with a long argument list, and does little to improve readability.
- [ ] [This Ebola forecasting model](https://www.sciencedirect.com/science/article/pii/S175543651730021X?via%3Dihub) is an interesting example of a simple but effective model with process error - [ ] [Cholera](https://deepblue.lib.umich.edu/bitstream/handle/2027.42/62519/nature07084.pdf;sequence=1) and [more methodological treatment of similar...
Key difference is boxes for couples, which generates many parameters for describing partnering and un-partnering. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005453 Related to #207 From @bbolker: > Another point is that we didn't worry about...
Here's an example with vizNetwork that's not great. https://canmod.github.io/macpan-book/flow-between-states.html#topological-sort I like vizNetwork in principle but I've been struggling a bit with it. Another consideration is how this interacts with topological...
When using simulate_ensemble this can come up. The troubleshooting guide should suggest PDify==TRUE