Stephen Shank

Dear @NatJWalker-Hale, This is a neat idea and it creates some interesting use cases for our tools. I've started work on it, and will use our lab's alignment viewer: https://github.com/veg/alignment.js...

Dear @anaome, Thanks for an interesting use case! In terms of a trick, you could simply multiply the width of the `svg` after phylotree has finished rendering with a `setTimeout`......

Dear @smoretti, Thanks for your interest in phylotree. In case it's still of interest, `npm run develop` should also work in place of `yarn develop`. Phylotree is available as an...

Dear @smoretti, Sorry for the delay. I've tweaked our parser to automatically parse attributes from this format and add them to each node's `data` attribute. This is displayed for p-values...

Dear @IgnatG, As far as I know, this functionality does not exist in phylotree.js at present. There seems to be a function to do this in ETE3: http://etetoolkit.org/docs/latest/reference/reference_tree.html#ete3.TreeNode.prune Let's keep...

Dear @IgnatG, Also it definitely *could* be done. Perhaps by programmatically hiding, see the following functionality which is part of the default user interface. I just meant that there is...

Dear @hannah-fisher, Thanks for reporting; this appears to be a bug. I will look into a fix. Best, Stephen

My name is Stephen Shank, and I'm a postdoc at the Center for Computational Genetics and Genomics at Temple University. I'm a mathematician by training and am currently working on...

Dear @mumu520520, It looks like we had a database failure over the weekend. I've restarted it and was able to [submit a RELAX job](https://datamonkey.org/relax/6331a05d93ca9c31cdc3ec05). Can you please try again and...

Thank you for such a prompt and positive response! Some data can be found here: https://galaxy.hyphy.org/api/datasets/889b3527af72ff94/display?to_ext=bedgraph It's from [this history](https://galaxy.hyphy.org/u/stephenshank/h/epigenetics) and was generated with the [bamCoverage](https://toolshed.g2.bx.psu.edu/repository?repository_id=d0d9710a573c56e6) tool on reads mapped...