phyml

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I get this file ,but some value of bootstrap are -1. I do not know what is the reason and how to explain it and work it if it is...

lwlwx

stephaneguindon

Memory error when using phyml with a custom model

3

Hi, I get a memory error upon executing [phyml ](https://anaconda.org/bioconda/phyml)on the attached alignment with the attached custom aa matrix. *** Error in `phyml': free(): invalid next size (fast): 0x0000556389604930 ***...

halabikeren

Hey all! I am using the default settings of phytime on my dataset. My dataset is in the same format as the example dataset, but phytime is not running at...

Jigyasa3

Hey all! I have a slightly technical question. The examples in the manual show that a) we can have different rates (R1,R2,R3,R4,R5 etc.), b) which can have different init.values (eg....

Jigyasa3

phytime not working on the dating_example.xml

2

Hey! I am testing the phytime run on the example file, and I get the following error- code- `phytime --xml=dating_example.xml` error- ` . 1365 patterns found (out of a total...

Jigyasa3

Phyml-mpi stuck before starting bootstraps

1

Hi, I have an alignment file with 455 amino acid sequences. I am running the following command: mpirun -np 20 ./phyml-mpi -i phyml_analysis/seq_phyml_tree.txt -d aa -q -m LG -a e...

ckallu

Good evening, I'm trying to use phyml on 79 unique strains with amino acid sequences. I've created the phylip file with all 79 strains. The comand line is : phyml...

lorenapr92

phyml-mpi

2

when I use phyml-mpi, it seemed that phyml-mpi did not recognize my cpu number specified by mpirun -np 2, running as ' Running the analysis on 1 CPU..' and gave...

yuyuqi-design

Err.: Problem with species VACV's sequence

5

I am getting the above error about the first sequence in my phylip alignment, and when i remove it the same error occurs about the (new) first sequence. I cannot...

stgoldst