phyml

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build with --disable-native fails

3

After configuring with `--disable-native` the build fails: ``` gcc -I. -I.. -std=c99 -O3 -fomit-frame-pointer -funroll-loops -Wall -Winline -finline -MT sse.o -MD -MP -MF .deps/sse.Tpo -c -o sse.o sse.c In file...

rekado

Dear Professor When I try runing my dataset using phytime, I encountered an error with prompt as below: . site = 0 . invar = 0 . mixt = 1...

biozhajie

Hi, I have more than one thousands of sequences to be estimated a time tree using phytime, with a known sample date for each sequence. Now I want to use...

biozhajie

Dear Doctor, I am learning how to use phytime to estimate a time tree using a modified xml file, but run with error prompt: Encountered an issue while loading the...

biozhajie

Compilation for non-AMD/Intel CPUs

3

Hello, I'm [packaging PhyML for openSUSE GNU Linux](https://build.opensuse.org/package/show/home:vojtaeus/PhyML) and for "standard" architectures (AMD x86) it works fine, but for other architectures --- ARM, PowerPC and RISC-V I get various compilation...

V-Z

phytime fails to compile

2

Hello, we discussed this in #157, so I just report that PhyTime in Spring 2022 release [fails](https://build.opensuse.org/package/show/home:vojtaeus/PhyML-phytime) (Winter 2021 release worked well).

V-Z

PhyML Compiling Error on Windows (MSYS2)

2

Hello, I've been trying to compile a Windows executable from the Spring 2022 release, but I keep running into `undefined reference to 'WinMain@16'` errors when running `make`. I've tried this...

amduffy

Parallelizing PhyML bootstrapping

2

Hi all! Thanks so much for PhyML - has been super helpful in my microbiome analyses. I have found that when I set bootstrapping value to >1, the program seems...

sevance

Dear phyml developers or skilled users I have been using phyml in my linux for the main reason to predict ancestrals sequences from a set of aligned protein sequences (msa.phylip)...

famotsuka

PhyML run with constrained tree

1

Dear Stephane, I am trying to use the --constrain_file option to constrain the topology of the tree. However, I run into several problems: A) it seems to me that the...

fxjonas