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Published 20 hours ago • verified publisher icon stephaneguindon

phyml-mpi

Open yuyuqi-design opened this issue 4 years ago • 2 comments

when I use phyml-mpi, it seemed that phyml-mpi did not recognize my cpu number specified by mpirun -np 2, running as ' Running the analysis on 1 CPU..' and gave me the error The number of CPUs used in the MPI bootstrap analysis should be . strictly greater than 1 (it is equal to 1 here). My command is : mpd & mpirun -np 2 phyml-mpi -i trim2_outgroup_dropDupli.phy -d aa -q -b 100 -m LG -a 0.749 -f m --pinv 0.05

Thanks a lot!

Yuqi

yuyuqi-design avatar Apr 20 '20 08:04 yuyuqi-design

Please use the following command instead: mpirun -np 2 ./phyml-mpi -i trim2_outgroup_dropDupli.phy -d aa -q -b 100 -m LG -a 0.749 -f m --pinv 0.05

stephaneguindon avatar Apr 22 '20 08:04 stephaneguindon

@yuyuqi-design do you success to install mpi version?

liamxg avatar Aug 15 '23 03:08 liamxg