Augustus takes 420G ram +59h

[Sebastien-Raguideau]

Hello I have a new issue for you :) Some of the genomes I'm looking at are taking forever to be profiled. When looking at it in detail augustus is being slow (50h+) as well as hogging ram (worst so far is 420G ram) on some genes. As I don't monitor all the time I don't know if some of theses managed to complete before. From what Is running in my server I have 6 ELP3 and 3 RPO21 running for more than 40h.

I can share with you an example where it does not end so far. Here is a command running forever: augustus --optCfgFile=/mnt/gpfs/seb/Applications/UFCG_v1.0.1/UFCG/config/ppx.cfg --predictionStart=165215 --predictionEnd=185215 --proteinprofile=/mnt/gpfs/seb/Applications/UFCG_v1.0.1/UFCG/config/model/pro/ELP3.hmm /home/sebr/seb/Database/Fungus_DB/UFCG/tmp/Conco1/tmp/Conco1/Conco1_scaffold_37.fna

with genome and temp dir: Conco1_issue.tar.gz