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Published 20 hours ago • verified publisher icon steineggerlab

issue with AGUSTUS

Open Keevai09 opened this issue 10 months ago • 3 comments

Hi, I have tried to resolve this issue but failed to do so while using UFCG. Please help asap.

ERROR! AUGUSTUS-PPX config file is absent or improperly formatted.

I get this in the latest version as well as the old one.

Keevai09 avatar Apr 08 '24 11:04 Keevai09

Please refer to the comment I wrote before: https://github.com/steineggerlab/ufcg/issues/16#issuecomment-1550556324

If the issue persists, please provide following information for further examination:

  • Platform (OS)
  • Installation method (manual, conda, etc.)
  • Messages when -dev option is provided

endixk avatar Apr 09 '24 01:04 endixk

Thank you very much for the response. I tried what has been mentioned #16. Now I am facing this issue.

#First it gives Solving dependencies... UFCG |: Failed to solve : augustus #I provide the path to agustus and I get the below error ERROR! Invalid binary executable file given

Please note I have added the agustus path to the bashrc file etc.

I am using Ubuntu on linux. Installed through conda.

Keevai09 avatar Apr 09 '24 13:04 Keevai09

Hi, sorry for the late reply.

If the installation of augustus was successful, running /path/to/your/augustus --version from your terminal should print the version number of AUGUSTUS.

Please check if this is the case, and provide the proper and absolute path of augustus to the pipeline. If the issue persists, please provide the message with -dev option given to your command.

endixk avatar Apr 18 '24 07:04 endixk

Sorry for the late response. @endixk . Thank you very much for the help. It was an issue with augustus version. I installed augustus 3.5.0. It is working fine now.

Keevai09 avatar May 27 '24 05:05 Keevai09