Is it possible to rank the entire database?

[LTEnjoy]

Hi,

Thank you for the great project!

I wonder whether I can obtain the rank for every entry in a custom database. For example, given a query protein and a database containing 1,000 proteins, can I rank these 1,000 proteins based on the probabilities they match the query protein?

Thank you in advance and looking forward to your reply!

[milot-mirdita]

You can use foldseek search/easy-search --exhaustive-search to get alignments for all query-target pairs.

[LTEnjoy]

Thanks a lot! I'll try it out!