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How to get bot structure alignments and its TMScore and RMSD after easy-search

Open amani-acog opened this issue 6 months ago • 0 comments

I am new to the Bio world and Foldseek.

Please help me in understanding this:

  • I have pregenerated databases downloaded locally, Now I want to search on all the databases and aggregate results, How can it be done?
  • What all output formats available, I want my output to have structure homolog ids, full length sequences of structure homologs, RMSD, TMScore and structure alignment coordinates, it will be good if I get alignment coordinates in a PDB and rest of the details in a tsv or json. Is it possible

amani-acog avatar Aug 22 '24 10:08 amani-acog