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Abnormally high RMSD for alignments displayed on web server

Open diegoeduardok opened this issue 2 years ago • 0 comments

Expected Behavior

RMSD to self should be zero.

Current Behavior

When I search on the web server using a PDB accession code (e.g., 3KDH) and I click on the tab "PDB100", the first result is the same PDB structure that I entered. However, when I display the alignment, the RMSD reads an abnormally high number that varies from query to query, even though the structures should be exactly identical.

Steps to Reproduce (for bugs)

Open search.foldseek.com, click Load accession, enter the PDB ID 3KDH, click PDB100, display first alignment.

diegoeduardok avatar Oct 05 '23 21:10 diegoeduardok