A tutorial for the prediction of domain family by local structure similarity

[CrazyHsu]

Hi, thanks for developing foldseek which greatly facilitates our scientific research work.

Expected Behavior

I am trying to predict domain family using local structure similarity mentioned in your article, but the Method does not seem to describe how exactly this procedure is implemented. Can you provide a brief tutorial? Thank you in advance.

[ibarrioh]

Hi, thank you for your comments! I'm a bit uncertain about what do you refer to exactly, you mean the analysis leading to results in figure 2? Or do you mean the analysis for results in figure 4?

[CrazyHsu]

Hi Inigo. Yes, what I am asking about is the analysis precedure used for figure 4.

[CrazyHsu]

Hi @ibarrioh. After two weeks of trying, I still can't reproduce the analysis precedure in section Domain prediction by structure search that you illustrated as Figure 4a. Can you help me?