steineggerlab
Error downloading proteome subsets
I get the following error downloading AFDB proteome subsets with foldcomp.setup Other dbs download successfully
----> 1 foldcomp.setup('h_sapiens')
File ~/envs/devo/lib/python3.10/site-packages/foldcomp/setup.py:87, in setup(db, download_chunks) 85 def setup(db="afdb_swissprot", download_chunks=16): 86 for i in ["", ".index", ".dbtype", ".lookup", ".source"]: ---> 87 asyncio.run( 88 download( 89 f"https://foldcomp.steineggerlab.workers.dev/{db}{i}", 90 f"{db}{i}", 91 chunks=download_chunks, 92 ) 93 )
File /usr/lib/python3.10/asyncio/runners.py:44, in run(main, debug) 42 if debug is not None: 43 loop.set_debug(debug) ---> 44 return loop.run_until_complete(main) 45 finally: 46 try:
File /usr/lib/python3.10/asyncio/base_events.py:649, in BaseEventLoop.run_until_complete(self, future) 646 if not future.done(): 647 raise RuntimeError('Event loop stopped before Future completed.') --> 649 return future.result()
File ~/envs/devo/lib/python3.10/site-packages/foldcomp/setup.py:35, in download(url, output, chunks) 33 async def download(url, output, chunks=16): 34 async with httpx.AsyncClient() as client: ---> 35 file_size = await get_size(client, url) 37 # check that file is not already downloaded 38 if os.path.exists(output) and os.path.getsize(output) == file_size:
File ~/envs/devo/lib/python3.10/site-packages/foldcomp/setup.py:8, in get_size(client, url) 6 async def get_size(client, url): 7 response = await client.head(url=url) ----> 8 return int(response.headers["Content-Length"])
File ~/envs/devo/lib/python3.10/site-packages/httpx/_models.py:228, in Headers.getitem(self, key) 225 if items: 226 return ", ".join(items) --> 228 raise KeyError(key)
KeyError: 'Content-Length'
Thank you for notifying me this. We were aware of this error log and the downloaded database seems fine. I'll try to fix this soon.
