conterminator
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Conterminating the output of DIAMOND deepclust
Dear @martin-steinegger ,
I really like the approach taken in conterminator
and would like to apply it in my dataset, which is the output of diamond deepclust
. However, I am unsure whether the diamond deepclust
be used as an input to conterminator
. Could you let me know whether this could be done?
The example output of diamond deepclust
on the example sequences, i.e. diamond deepclust -d example/prots.fas -o dmnd.deepclust.out --approx-id 30
, is as follows.
A5GQF2.1 B1X4Q7.1
A5GQF2.1 A5GQF2.1
A5GND2.1 P12409.1
A5GND2.1 A5GND2.1
A5GND2.1 B1X3Y2.1
A5GND2.1 P08445.1
Q3AJZ0.2 B1X3H9.1
Q3AJZ0.2 Q7U6W0.1
Q3AJZ0.2 Q3AJZ0.2
P20403.1 B2ZCQ2.1
P20403.1 B2ZCQ1.1
P20403.1 B2ZCQ0.1
P20403.1 P20403.1
(@RocesV , maybe this question could be interesting for you too.)
Best regards, Sodai