Start-up Crash

[jinky1000]

Hi Stefano,

On Mac I am getting the following crash report when I start-up Systemic version 2.18 on an iMac running OSX Version 10.9.5 Mavericks and R version 3.13:

*** caught segfault *** address 0x18, cause 'memory not mapped'

Traceback: 1: dyn.load(file, DLLpath = DLLpath, ...) 2: library.dynam(lib, package, package.lib) 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 4: asNamespace(ns) 5: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package) 6: loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) 7: namespaceImport(ns, loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]), from = package) 8: loadNamespace(package, c(which.lib.loc, lib.loc)) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, classes, parentenv, handlers) 12: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 13: try({ ns <- loadNamespace(package, c(which.lib.loc, lib.loc)) env <- attachNamespace(ns, pos = pos, deps)}) 14: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) 15: .getRequiredPackages2(pkgInfo, quietly = quietly) 16: library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly) 17: doTryCatch(return(expr), name, parentenv, handler) 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19: tryCatchList(expr, classes, parentenv, handlers) 20: tryCatch(library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly), error = function(e) e) 21: require(name, warn.conflicts = F, character.only = TRUE, quietly = TRUE) 22: withCallingHandlers(expr, message = function(c) invokeRestart("muffleMessage")) 23: suppressMessages(require(name, warn.conflicts = F, character.only = TRUE, quietly = TRUE)) 24: .require.library("Hmisc", hush = TRUE) 25: eval(expr, envir, enclos) 26: eval(ei, envir) 27: withVisible(eval(ei, envir)) 28: source("systemic.r") 29: eval(expr, envir, enclos) 30: eval(ei, envir) 31: withVisible(eval(ei, envir)) 32: source("R/gui.r", chdir = TRUE) aborting ...

I'm sorry, _____. I'm afraid I can't do that... :(

It appears the Console (or its R kernel) has crashed.

Your options:

• Your environment is auto-saved every minute. To restore, click on this link: ↝RESTORE.CRASH
• Alternatively, you can restart from scratch using the menu Edit -> Kill and restart session

It seems to be having problems with the R GUI. Any thoughts?

Thanks