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Identify sex (contig ploidy) of samples

Open nh13 opened this issue 4 years ago • 0 comments

I am looking for a way to specify the ploidy of the samples, in particular, for sex chromosomes. I see sexMap in bcf_filtered_reader.cpp is a file that can specify sex, but isn't exposed on the command line. How do we specify the sex for the input samples in the input VCF?

nh13 avatar Jan 20 '21 18:01 nh13