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Error: index file too big for skippable zstd frame Error: could not append S1R index

Open Nixon-hk opened this issue 4 months ago • 6 comments

Dear Development Team,

I encountered an error message when I try to do imputation:

Error: index file too big for skippable zstd frame Error: could not append S1R index

, and I saw the disk usage running out, so I tried to impute by splitting chromosome into 5 Mb chunks, but I still encountered the error message again.

As my reference panel and the phased file are just 200MB and 1.2GB, I do not understand why I encountered such memory problems, as my server can handle well with large files.

Do you know what are the possible causes of this problem ? Many Thanks. Have a nice day.

Yours sincerely,

Nixon So

Nixon-hk avatar Sep 02 '25 18:09 Nixon-hk