EPACTS
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statgen
Installing EPACTS in CentOS Linux release 7.9.2009. The Make step has the following error messages: make[2]: *** [Makefile:599: pEmmax.o] Error 1 make[2]: Leaving directory '/users/atin/bin/EPACTS_3.2.6/EPACTS-3.2.6/src' make[1]: *** [Makefile:321: all-recursive] Error...
Dear Team, I am trying to figure out the difference between EPACTS and REGENIE (both of them are linear mixture model). I notice recent FinnGen-metablic-association NC paper use EPACTS rather...
Emmax test
Hello! I am running emmax gene-based CMC test on the sample 47,000 participants. The input vcf file includes 1824 variants. The number of individuals is the same kinship, vcf and...
HI, I am actually running "EMMAX-CMC" on gene panel sequencing data from 61000 individuals. Although I am running 40 jobs in parallel but still its been almost 16 days the...
- in Ubuntu 20.04 python and associated packages have moved to 3.x Signed-off-by: Sven-Thorsten Dietrich
Tweak pip package version to enable build on Ubuntu 20.04. This fix updates only the docker build, thereby capturing the necessary changes.
We noticed that for any gene-based test result from EPACTS VT, that the number of individuals carrying variants (Burden_CNT) do not match with the .vnts files. 1) Is this a...
I am using EPACTS v3.4.2 and I am trying to run Single Variant Test - q.emmax test. I am using the provided test files. I am generating the kinship matrix...
