Jay Stanley

Inaccuracy in randomized SVD at moderate ranks

7

Hi, ### *Randomized SVD is not accurate* Currently most (if not all) of the PCA / linear dimensionality reduction / SVD is first routed through either `TruncatedSVD` or `PCA(svd_solver='randomized')`. It...

Currently all of the kernel functions are pretty baked into the graph classes. It seems to me that it would be more useful to refactor this into a `kernel` class...

Full algorithm description?

1

Hello, I am attempting to understand your approach to reference mapping. I notice that at some point in your method, you are using SCTransform to compute Pearson residuals on a...

Combining annotations from multiple references

1

Hi, Is there support for aggregating annotations from multiple references? For instance, we have some brain data that is not exactly the same region as the Allen human cortex you...