Running CheXpert labeler on Google Colab?

[PabloMessina]

Hi. I'm trying to run CheXpert labeler on Google Colab, but I'm unable to generate labels for the sample_reports.csv. You can find my attempt here: https://colab.research.google.com/drive/17ABqvLdJd5GcuxRGPMgQwS5HqtWSIcww?usp=sharing

Do you have, or at least know how to implement, a minimal working example of CheXpert labeler running on colab?

Thanks in advance, Pablo

[jirvin16]

I'm not aware of a working example in Colab. Instead of running a shell command you could try importing the label function and running it from within Colab instead?

[PabloMessina]

Do you mean using Colab's Python instead of the Python that comes with conda? What should I do instead of running conda env create -f environment.yml?

[jirvin16]

I mean something like:

from chexpert_labeler.label import label

label(...)

[njan-creative]

I am also trying to setup on Google colab without success.. Were you able to get it to work ?