cmdstanr
cmdstanr copied to clipboard
Pathfinder doc / behavior issues
I titled this issue as generic Pathfinder doc / behavior issues, not to make separate for each small issue
$pathfinder() doc says
draws: (positive integer) Number of draws to return after performing
pareto smooted importance sampling (PSIS). This must be
smaller than ‘single_path_draws * num_paths’.
Current behavior is that this is by default 1000 which can be bigger than ‘single_path_draws * num_paths’ and also it can be set to value which is bigger than ‘single_path_draws * num_paths’, without any warning.
@avehtari Are you proposing just that we add a warning or change the behavior?
@WardBrian @SteveBronder Is this also the case with the cmdstanpy implementation or did we end up doing something different here accidentally?
We had discussions about automatically adjusting the num_single_draws to prevent this but Steve argued successfully that this would be too magic. Cmdstan got a warning for it in https://github.com/stan-dev/cmdstan/pull/1221
Oh ok great, so this warning will get handled in CmdStan itself.
I'm fine that the document is updated to reflect that it doesn't need to be smaller
Ok instead of "This must be smaller than ‘single_path_draws * num_paths’." should we just say "This should be smaller than ‘single_path_draws * num_paths’ or CmdStan will throw a warning." Or something else? (Currently it won't throw a warning but sounds like next version will)
@avehtari are you ok with changing the doc to "This should be smaller than ‘single_path_draws * num_paths’ or CmdStan will throw a warning."? (although the warning won't come until the next version of CmdStan)
Yes
Ok I updated the doc to
This should be smaller than
single_path_draws * num_paths(future versions of CmdStan will throw a warning).
I will leave this issue open and wait to close it until the CmdStan with the warning is released (at that time I'll update the doc again).
Adding here another pathfinder issue
save_single_paths option does not seem to be working (installed the latest cmdstanr from github). With save_single_paths=TRUE (or =1) there are no files for individual paths and the only csv shows
# save_single_paths = 0 (Default)
Has this been fixed?