Seth

Hi! could you share the bamfile / part of the bamfile that leads to this? Or paste in the bam header output from samtools when used on that bamfile as...

If you had a minimal example with a bamfile and reference that would be awesome! I'm really not sure what the issue is. [This](https://github.com/sstadick/perbase/blob/abdfb7595ac8c42cc24d93b80175fb3e4585d7c6/src/lib/position/pileup_position.rs#L225) function is what would generate the...

@davidecarlson I'm glad that worked! @twaddlac 👍

I don't think the any of the original features here are implemented? The global find replace works, but none of the following works? - :s/search/replace - replaces one occurrence of...

Nothing off the top of my head. I'd take a guess though and say that larger chunksize would be better for sparse data if you aren't using an intervals file...

These are great points. I've also found the workflow with `cargo bundle-licenses` to be lacking, but haven't been working on anything that uses it in a while. That may be...

Great point that I wouldn't have considered. That's not too hard to always add a core license I suppose, but we'd need to detect if something is no-std, which seems...

Thanks for making this issue! I was not aware of that requirement by Apache licenses. I'll add this as a bug for now, as this is intended to be the...

I disagree, but also see what you mean. `--previous` should favor the previous over anything found. But having a `--copy-from-previous-if-missing` or something like that would be very useful and more...

Thanks for making an issue! The short of it is that notify is using a workspace and symlinking the license files from the workspace dir into the individual crate directories....